Bonsai
is a unique artform in that it combines not only creativity but
also horticultural skill. However well designed a bonsai is, it
must always have its horticultural needs met in order that it
remains in good health and is able to cope with the stress of
styling, wiring and life in the confines of a pot. However without
understanding how plants function, it is harder to understand
the necessity of applying sound horticultural practices.
Understanding basic plant physiology is also essential to understanding
how bonsai techniques are used to alter the natural growth habit
of plants and the effect that these techniques have on bonsai.
The three principal areas of any tree or shrub are the roots,
the trunk and the leaves.
FUNCTIONS OF ROOTS

The root system of a bonsai is normally only considered at repotting
time and for the rest of the year it remains out of view and often
out of mind. its development though is as important to the health
and growth of a bonsai as the rest of the plant.
The roots of any plant have three main purposes, the first is
simply to anchor the plant into the ground or soil. This is performed
by thick, strong roots which radiate from the base of the trunk.
The second purpose is to store
nutrients during the dormant (usually Winter) period. Lastly,
roots function to absorb water and nutrients via single cell growth
extensions, called root-hairs. Water is then supplied to other
parts of the plant via the Stele. Some plants develop a tap root
that travels into the ground until a continual source of moisture
is found before developing fine roots that are able to 'gather'
water and nutrients, other plants form a wide spreading fibrous
root system in which there is no main or tap-root.
Roots grow through the hours of darkness, receiving energy that
the plant has accumulated during daylight hours. In the daytime,
root growth is very slow as the rootsystem supports growth in
the above ground areas of the plant.
Root hairs and epidermal cells absorb water and nutrients from
the soil, and these are conducted up the trunk to the leaves of
the plant. However, a great deal of water (around 95%) is given
up to the air as a result of a process commonly known as transpiration.
To give an idea of how much water is required by a typical tree
growing in a forest, it has been estimated that Eucalyptus regnans
growing at around 250 feet in height can lose several hundred
gallons of water on a hot day. If the tree is to survive, this
water must be replaced by its network of fine roots that will
typically equal the size of the foliage that they support.
The rise of water in a plant body is caused by root pressure,
capillary action, transpiration and cohesion. A tree of 100ft
(or more) is only able to supply water to its uppermost branches
because the tensile strength of water is very great; that is to
say, an enclosed column of water will not break into separate
droplets except under enormous tension.
Roots absorb
water by a process known as osmosis, whereby water with a low
concentration of minerals and nutrients passes through the root
membrane, the 'Endoderm' towards the moisture within the rootsystem
and the Stele which has a higher concentration of minerals and
nutrients. It should be noted that if the water in the soil has
a stronger solution of nutrients than the roots, usually as a
result of overfeeding, water will be drawn from the roots back
into the soil, depriving the tree of water. This process is known
as reverse osmosis.
If the soil available to the roots of a plant is too dry, root
hairs wither and are no longer able to absorb water and nutrients.
Root hairs dry out rapidly when exposed to situations where there
is no moisture and this why when repotting or barerooting a tree,
it is important to keep the rootsystem moist.
Conversely if the soil is too wet, roots suffocate and lose their
absorbing capacity. For roots to grow well they require abundant
amounts of oxygen in the form of aqueous vapour. If the soil is
compacted or permanently wet, atmospheric air is unable to penetrate
the soil and the rootsystem can suffocate, leading to a dieback
of roots, decay and root-rot.
Plants are unable to make use of nitrogen in the air directly,
but some bacteria, like mycorrhiza, make their way into the roots
of living plants and fix nitrogen so that it is made available
to the plant. Mycorrhizal bacteria develops naturally in the soils
of trees and can commonly be seen in the soils around Pines. When
repotting, the addition of pine-needle litter is particularly
useful to increase the level of mycorrhizal bacteria to enable
more rapid uptake of nitrogen in a plant, particularly when inorganic
soils are used.
FUNCTIONS
OF THE TRUNK, BRANCHES AND SKIN 
As with the root-system, the trunk and branches of a plant perform
three functions. The first is simply to support the weight of
the foliage and extended branch growth results in leaves gaining
maximum possible exposure to light.
Secondly, as with the roots, the trunk and branches are able to
store nutrients ready for when they are required. The third function
is to provide a conduit for water and nutrients from one part
of the tree to another.
Large amounts of water are transpired by a tree on a daily basis,
and as previously discussed, water is absorbed by the root system
and is supplied to the leaves via the trunk and branch system.
The vessels within the trunk up which the water travels is known
as the xylem and this lies just below the cambium layer. The xylem
is formed by cells, that elongate as they grow, these not only
thicken their sides with lignin but ultimately break down their
dividing walls where they meet tip-to-tip, so that together they
form long continuous tubes through which water is able to enter.
That done, the cells die. The pipes that are created are then
inert and dead but are also full of water. As the cells in a leaf
lose water by evaporation, it is replaced by water from the top
of the tubes and the whole water column is pulled upwards. This
puts an enormous strain on the sides of the tubes within a tall
tree, but their woody walls are rigid enough to withstand it.
Every season
the xylem which contains the water vessels is replaced by a new
layer, this annual replacement of the xylem creates the familiar
growth rings by which a tree can be aged. The old xylem then becomes
part of the heartwood of the tree. The heartwood is essentially
dead 'waste' material, but it acts in a structural capacity for
the tree, gradually widening year on year as the tree becomes
taller.
The cambium layer lies outside the xylem and this is the most
important part of a tree, responsible for controlling growth.
It is a single cell layer just beneath the bark and appears green
when the bark is scraped away in most woody plant species. The
cambium layer is responsible for producing new roots and new shoots
as well as tissue that heals over wounds.
Outside the cambium layer is the phloem, this is responsible for
distributing the sugars produced in the leaves back down to other
parts of the tree. This is also replaced every year and the build
up of old phloem layers forms the thick corky bark that can be
seen on old trees. The older the tree, the thicker the layer of
bark or dead phloem is, the dead layers of old phloem are not
very elastic and as the live areas of the trunk continue to expand,
the bark starts to split into long fissures and plates.
FUNCTION OF LEAVES 
Leaves are the place where the tree processes sugars in a process
known as photosynthesis. Using light as a catalyst, water from
the roots and carbon dioxide absorbed from the air, leaves produce
sugars within the mesophyll cells. These sugars take the form
of glucose (carbohydrates) which in turn provides growth energy
to the plant.
Across the surface of a leaf (the Cuticle) are small pores called
stomata which during daylight hours absorb the carbon dioxide
necessary for the process of photosynthesis. At night, when light
levels drop, the process of photosynthesis ceases and the stomata
expel excess oxygen and other gaseous by-products.
During the day, carbohydrates produced by the process of photosynthesis
are temporarily stored within the leaves themselves, but, at night,
they are translocated via the phloem layer of the trunk and branches
to areas of the tree where they are required for growth.
A second function of leaves is to allow water to evaporate through
their surface in order to keep a constant flow of water throughout
the whole tree. This flow of water allows the distribution of
nutrients gathered from the soil by the root system throughout
the entire tree.
Tree species have evolved a range of foliage types to allow them
to cope with differing moisture and temperature levels throughout
the world. Some species, such as pines and spruces have a waxy
coating to help conserve moisture during the winter when their
roots are frozen and unable to replace lost moisture within the
tree. This coating also prevents snow and ice adhering to the
upper leaf surface, blocking the stomata and effectively suffocating
the tree.
Other trees such as Eucalyptus and many coniferous species have
developed coatings and leaf shapes that prevent too much transpiration
of water in hot, dry weather. Other species have fine hairs which
reduce the effect of drying winds by reducing airflow over the
leaf-surface.
Species such as Japanese Maples, have a native habitat that is
naturally sheltered from the sun and wind and have developed only
very thin skin or cuticle. This means that in less favourable
conditions they are liable to sun and wind scorch.
Nearly all plants possess the characteristic of absorbing water
and minerals through the leaf surface. Conifers usually have a
greater capacity to absorb water than broad-leaved trees. Even
though the amount of water absorbed by leaves is not sufficient
for growth, it can still maintain a minimal life mechanism in
the plant. In the case of root decay, transplanting, or serious
root damage in a conifer, water sprayed onto the foliage will
supply the conifer with water for absorption. In the case of broad-leaved
trees that are still in leaf, spraying water helps prevent the
evaporation of moisture from the leaf-surface.